PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16046-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 464aa    MW: 49267.9 Da    PI: 4.3962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16046-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11282324754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       +ErrRR+++N+++  Lr+++P  +      K++ a+iL  A+eY+k+L
  TRIUR3_16046-P1 282 LAERRRRKKLNDRLYALRSVVPRiS------KMDRASILGDAIEYLKEL 324
                      58*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.98275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17278347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-14281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16282337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-13282328No hitNo description
PfamPF000104.0E-9282324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEVKEAEQPK QELPGFNMEQ ADAEFIVAQS EEMTKQLAIL ESIQDEAYEG DVHEHQGLGH  60
DQAALMGLEA GNHHDQHLLP MPSGGGGGFG APPMLDDDSW YFDAVGDAAG NGSMIPAPAT  120
VEASGSSSGF GDASQMFPLL DVPGFDLDIS GDLSAFLGAG NAPNASLLPH GNTDFLGSFG  180
GFGTAPAQTT DFGDLAGFDL FDTEDGGRKR KAAEPDIILD DADDDIISID ASGLNYDSED  240
GRGVEERGRK DGNESNANST VTGGAAAEGN GKKKGMPAKN LLAERRRRKK LNDRLYALRS  300
VVPRISKMDR ASILGDAIEY LKELKQKINV LQNELEASPS ASSLPPTPTS IHPLAPTTPT  360
MPALPSRVKE ELTSSPAQEP CVEVKLREGR IVNIRMMCSR RPGVVHSSLK ALEGLGLDVQ  420
QAVISYFNDF TLDVFKAECK DGPGPQAEEI KAVLLKSAGF HPAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271289KKKGMPAKNLLAERRRRKK
2283290ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5621840.0EU562184.1 Triticum aestivum cultivar Norstar ICE87 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757473.11e-116PREDICTED: transcription factor SCREAM2-like isoform X2
SwissprotQ9LSE27e-75ICE1_ARATH; Transcription factor ICE1
TrEMBLM7Z1P40.0M7Z1P4_TRIUA; Transcription factor ICE1
STRINGMLOC_56814.31e-175(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.12e-57bHLH family protein